NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0193726_1000009

Scaffold Ga0193726_1000009


Overview

Basic Information
Taxon OID3300020021 Open in IMG/M
Scaffold IDGa0193726_1000009 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)744665
Total Scaffold Genes759 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)579 (76.28%)
Novel Protein Genes22 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)21 (95.45%)
Associated Families20

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9871Long. (o)-107.0011Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001177Metagenome / Metatranscriptome756Y
F004030Metagenome / Metatranscriptome456Y
F005455Metagenome / Metatranscriptome400Y
F009625Metagenome / Metatranscriptome315Y
F010157Metagenome / Metatranscriptome307Y
F011009Metagenome / Metatranscriptome296Y
F011312Metagenome / Metatranscriptome292Y
F012699Metagenome / Metatranscriptome278Y
F024589Metagenome / Metatranscriptome205Y
F025333Metagenome / Metatranscriptome202Y
F031576Metagenome / Metatranscriptome182Y
F034634Metagenome / Metatranscriptome174Y
F035852Metagenome / Metatranscriptome171Y
F036798Metagenome / Metatranscriptome169Y
F041878Metagenome / Metatranscriptome159N
F051357Metagenome / Metatranscriptome144Y
F056132Metagenome / Metatranscriptome138Y
F063887Metagenome / Metatranscriptome129Y
F069103Metagenome / Metatranscriptome124Y
F077539Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0193726_1000009106F025333AGAAGGMIDAEVLRLRKLRSVALRARALAKILDSDCTQEQSVFARSAVMCWTIARIASGHLRAHPYLSYQQGPSPLDDVADNMMGSLAALNARRQDRRLSVYVQQLRNVAREVNDARALTWSPDLSDALGRIQIRMQRLANELEVGALAETGAVLTPRAKAVTRAETGNSLDEIAADNSWPYLAI
Ga0193726_1000009108F063887AGGAVEKKQSIAIEIALQTQVLKTCPIHRKIYFDDDADAASAFALAIELVRKHKPYVEEFHDNEHELMDLLSDTLSATPLCCPECQSLGVLGSLRERSGFVESALESR
Ga0193726_1000009136F024589AGGAMRPQKIAVVAVVMLAIVWAVGQIGVASAADADQYIGTWKGTWEGAGAGGRFDLTFTRGGDGKLAASVSVGSDMGDYNAKFSTLTVTGDKLAGAYEYPPDPQGEVTITGSFQPKDAIGTWSLGSKGKPGGQAIAGTWKVTKQ
Ga0193726_1000009150F031576GGAMSFKRCKLAAIPMAQMLLFAPQAFSADIRNLTGLPAYPNLSSAVMDGTFKTDTMGHWCMRFWADTSDSITTVEAWYRKTMLGSSEIDLTHDKTYKNYSGLVGLKIVLGIDYVVVYKTSGQAATSIDLYRCSPLK
Ga0193726_1000009184F051357AGGAGMRISTLIITAAIILTALSFRAHADASSPVTIVQGRSVVYYGDLNIETEQDAKTMLQRIERAAKKACGGHATFSSYTGALDHTFEECRSEAIHRTVKQLGASKVTRIYSEARSRDSWHRRPGEAEHHCL
Ga0193726_1000009190F004030GAGGVEDKQRREEFDTGLARIRHEIKGRLVQHGFFGSVTYKDIEATDHILSGSTVEIAVKGKTAERSFSRQEIEGCRLRVGGAVLSGVIAMVDELSA
Ga0193726_1000009195F069103AGGAMAVKSPVFDDLLHLASTSRSKSTVTLAAVSFAVCHLIVMGTYAAPSSGTADDLEIPRQLVHFAAELCRFALPLGVVIVGMIRGWSKQSTLP
Ga0193726_1000009203F036798GGAGMSTRLHDPCADSLLIGVAMATASVLLLRQSTEFPNSVEFVQIWPLFVIVLALAQMVTTLKERHQQGWGLLLAGDWLLANTMTSWACVQFSVPLLLAGLSLMTIMRGLRDHSEQLEQDHRAAH
Ga0193726_1000009376F012699AGGAGMGIPIPMTRNKRAELRAFALVGFGLFGMGGTILRAAADNGALYVAPGPSNLVAPDVVRRNQEQLAGTARKLGDLIGDSLKSPTSHATDLVVTTKCGRYLSASISYADGTVKTLNLGNAPATQSDMDKARAAIPILRIVDQPGCEH
Ga0193726_1000009388F005455GGAGMQDEAQITISGVKLTHDESMTVRVAIDTLANVLAEGLEEGETRALTDRYLSSLSRIQTLLESRETRKQ
Ga0193726_1000009423F011009GGAGMNTLSSKLTTFVAALVMNSLIIGAVGFLFEIQSHPHMSVMSFAKAVVAHQWLI
Ga0193726_1000009503F011312GGAGMKNLNTLSSKLTAFAAALAMNGLVLGALGYLFVLQSQPNMSAISFVKAVVAHQGLG
Ga0193726_1000009559F077539GAGGMNKMSAVLRIKAELALVEASKKLLGQHASVRIEPETRAYADTTTVVRKELDKLVGILADDASEKHWNVAARVAKCADYLAQIPSREVQDARLDMISAHKVLQDVEEITF
Ga0193726_1000009586F011009AGGAGMSTLSSKLTALAAALVMNSLIMGAVGYLFEIQSHPHTPVLSFARQVVAHQWFI
Ga0193726_1000009591F056132GGAMKKLLSLGLIMWGSAANAQNAPATATQAQGQARQLGILVGGTATQYDLCVKKGFLAKSDQSAEETATSILGRMPASGGPDQSAYVQEGWDMMKKEISTHESFYTQEKCAGVGKEWAKIVATARKK
Ga0193726_1000009598F035852N/AMENSILYTFSTIAQALGGAFALLSAFVLFRFQSLDASMLNASVGLRSIWKSPADLATYDTLRGLSVWPSLNKAIDAQIARMTAAHEETSFEVLATKSRLRAGQSLHGFITWSFWLAVSLTFLVMTGSVAVIPYAHEIAETHNQKFIHVLNLAGVAAFALCMVSYVFVIYAALLSRYGKSIIKPRIEALIKGQ
Ga0193726_1000009605F011009GGAGMNTLSSKLTAVAAALAMNSLIMGALGYLFEIQSHPHMSVISFARQIAVHQWLS
Ga0193726_1000009613F009625GGAGLALTAFELGKLKIVGHVREELDRAGIAAQSIRCISGGIETRPGIARLTIVANGTSQTLDLKSHEVEDCESIVVGETWHRIAALIGRLAS
Ga0193726_1000009614F001177GGAGGMAIKRSSKSKGASSHKPAASAPLRHVDVRAPQQMVPGEAYVGWLCKNRSCGRVIAIAATPPGGKALTDFDDQLTAIKCPHCEDENLYRWSARTEQIYTLKSVSS
Ga0193726_1000009619F010157GAGGMSSERTEEFSQPQVGSVAQTSADTRDAGTAGTPVPSDDSKRPAATVLVRGETIGNQEPKSPLKQKESPRKQVSEPKVKMQSRLPTLEDDSDVGVQKEQIVIRDGKADLAFTGTLLASVAPTSAPNGKWQEYRIYQTDGGKHVFSKVTRSVFAEEQDTHEAEVFDPTPSSVPSQLLRSARELARSRPLTWMDAATAFFGYDPLSKALYRKLGGQFEEHIS
Ga0193726_1000009663F034634GGAGMSPLIHVVDGLFGLAAVSSFAGFVFHLLTGSPDLALMCFVGIGGSAAMVWMLTTWRRA
Ga0193726_1000009699F041878GGAMDQAQLIQAAASIAGGMAAAHYDKFAGLVASRITEIAETAVKIAKAIEIEARKLP
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.