Scaffold Ga0193726

Basic Information
Taxon OID	3300020021 Open in IMG/M
Scaffold ID	Ga0193726_1000005 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020021 Open in IMG/M

Scaffold ID

Ga0193726_1000005 Open in IMG/M

Source Dataset Name

Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	784561
Total Scaffold Genes	701 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	507 (72.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

784561

Total Scaffold Genes

701 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

507 (72.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Proteobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9871	Long. (^o)	-107.0011	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.9871

Long. (^o)

-107.0011

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014053	Metagenome / Metatranscriptome	266	Y
F015179	Metagenome / Metatranscriptome	256	Y
F024481	Metagenome / Metatranscriptome	205	Y
F045225	Metagenome / Metatranscriptome	153	Y
F082956	Metagenome / Metatranscriptome	113	Y
F094154	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193726_1000005105	F015179	AGGAG	MTSRKSQWVLGIIASATMAGCASTPTGVVPAGQDAYHVSAIGARYETQTDTNLKALSVANQYCEQSGKHVMFRQSTESSDHAWSPKQEDLTFVCMDAKDPAYMRAAIERDPPVVAKED
Ga0193726_1000005368	F094154	N/A	MPIGAQDHLDVLYGRQRLLSDEATRLETERDLSEKNSDLRYILEIEIVALREEASRISARIADVLERDLQR
Ga0193726_1000005456	F024481	GGA	MQNPLFWIEWLDRLDRVLNSARQDIAVLQRTANSRSLEAIGRSKRQLSALINDLRLLDPDVVAVGANSGPADPLQSALETTVVKLGILAEIPAASAPGVLDRMLAAGDAALRDSFYEAALLLHPHRRRA
Ga0193726_1000005481	F045225	AGGA	MRVNQTSAVEEENDVNVVRLGLDLPAAAASAFEDIKQKFTNQRQWREFVSAVQCSVNYPAAINSLRSGTKWFSDGLAQASSCLARTLRGQGV
Ga0193726_1000005568	F082956	AGGAG	MKTIHGLAALPLSLILGLVPFALIAVDDFVVAKAEVSTTVAASPEHALGMEGR
Ga0193726_100000557	F014053	GGAG	VQRNSVDHKRLMRESTDRVQIALYGADPNEQLVASRLLESPSAFRTWESEHSGLMLEIANPSFKRTQAALLKKATLRLIHRKALFEYLRDEQIRGNVRRRIIASFHPTQDYTRSVIAEHGLYLRKACSFMCTSHVGSNVVRDPGFFDPMTRYQELYAEYFQLFCRTHFGTDSADIEPQVELLPLLKHQLEECRVAIMNPQPGTEWLRREGELRQPTGDTARLPRLGGFQRKP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193726_1000005

Overview

Ecosystem & Geography

Associated Families

Sequences