NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0193738_1096933

Scaffold Ga0193738_1096933


Overview

Basic Information
Taxon OID3300020020 Open in IMG/M
Scaffold IDGa0193738_1096933 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)845
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8827Long. (o)-106.9107Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045445Metagenome / Metatranscriptome153Y
F100602Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0193738_10969331F100602AGGAGGMGFYAEPYLREARDRIKSSSAQTGSTNTELGDFNQIADAVEKAIKAALVENSGSIPQKLESQNLVSICQTTGVWDVLPPALRGLVQDVATLRSTANRSPESLKTDNSSAQLKRYFQIARGLID
Ga0193738_10969332F045445N/AARKGDIAKMIEVIDDLGGVGAGKPVPGAGNKRPQEYADYCKVGPTRVPFVTFPDAELDKAKKRAAHWMELNKKYRPLVEAERSRSAA

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.