NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193738_1000648

Scaffold Ga0193738_1000648


Overview

Basic Information
Taxon OID3300020020 Open in IMG/M
Scaffold IDGa0193738_1000648 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16469
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (88.24%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8827Long. (o)-106.9107Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017350Metagenome / Metatranscriptome241Y
F020724Metagenome / Metatranscriptome222Y
F039366Metagenome / Metatranscriptome164Y
F061005Metagenome / Metatranscriptome132Y

Sequences

Protein IDFamilyRBSSequence
Ga0193738_100064810F039366AGGMRLPGLGVPVDPLTGYPLSQVVLGRLAKLKDVVWTLRLALHELDGTTEGSQPGNRCMAMAFTKLDEVAMWAAEAVLERPGGR
Ga0193738_10006484F061005GGGGGMRVQFGDLPDYGKELLTEHLNINFMPWVMKAPRWFSAWALDDVGDITGVFATEFKYPWEGYVTVLVRDPRCMSRRTLRAIFTALFSQARRLTAEVEPHNERALRQVQRMGFVYEGYRRMGLEGSRDVLCYGMLRDDCKYLPGYAGPTVWAASALTAETYEKVH
Ga0193738_10006486F020724AGGCGGMPRLLTVLNTVSDASLEIGLVQRPVGNVVGTADQDIAQMAALLSNVADELLLDPPYRDQLGDGNWLTDAAGVTFKSRPTADDDVVLFDGRLAVDGLKYRFLKAKGLEYGEEQRDFIARLNKIAGRNAPVLDLNEDVGRVQ
Ga0193738_10006487F017350GGAGMSDTPTLVRFSSGWERDGSGPDGMPLFRETIRVRMDRPPYLSLEREAEEADFADYPEPYEMYRKTCEARKEIVGYPLAIWPACPPHIFQMCAVRDIHTVEQLAQLVSKKRRAEAIKTIPADVIELADRAAKMVELQSKAGQYEEIVTNLQSQLAAMQEQLTEAAQTVAAQRTLIDSLRLKAVA
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