NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193738_1000224

Scaffold Ga0193738_1000224


Overview

Basic Information
Taxon OID3300020020 Open in IMG/M
Scaffold IDGa0193738_1000224 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39614
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (19.51%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8827Long. (o)-106.9107Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004644Metagenome / Metatranscriptome429Y
F010981Metagenome / Metatranscriptome296Y

Sequences

Protein IDFamilyRBSSequence
Ga0193738_100022410F010981N/AMSTHLTLDELILQYSENPFIDEKMFDLPSDTQQKQKILSRLLNIASNLFSKSPVKELSSYKRRYEIKYGV
Ga0193738_100022411F004644N/AMALSLSLFTMQSCNNDTNSKTDEKTVSSTDVPASVQTAFSAKYSTATDIKWEDAHENNIQTYKAKFTMNGKKMKAEFDSSGGFVKEEEDN

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