Scaffold Ga0193738_1000143

Overview

Basic Information

• Taxon OID: 3300020020
• Scaffold ID: Ga0193738_1000143
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47001
• Total Scaffold Genes: 57
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 51 (89.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8827
  • Long. (^o): -106.9107
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025043	Metagenome / Metatranscriptome	203	Y
F026598	Metagenome	197	Y
F034225	Metagenome / Metatranscriptome	175	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193738_100014312	F025043	AGAAGG	MSQVGEFPGLQQSNRRAIRAPVNPLDKSTVVSILPKSIYEKKITIQPGTFEIPPGTFESPSVLVVGSSSWWREIDENQPLLEIPLSSVQIADSIVRDYCNGLLGCNMYDLMPGIFYIPGDYTAERVKKEQTLLLNKANENQRKWYMELVRIADILWSRTNGNPLSISNDARLACRELNITNKPWLGDLQTAELVRCIACGSLRNANFPICQTCKAVADPELARKLNLEFAK
Ga0193738_10001434	F034225	GGAG	MAVEVSVKQMGLTRDTGPGGFMERVQAMLARVTSTILNESADTPYHSHRAMYAQRVVQSPQMAANQAGPQVVMGVNVIAATTYDEIEKKSTCTIADIDLESQITTLWNALAGIDTPS
Ga0193738_100014350	F026598	AGGA	MPIISFNDRDLLRGKIVEPAWYVVNIVNVGEAPSKDGGSTNYPVEGVIVRNADNGSEDFANVPLDWNFNSKAISFAAGFLSALGVDVKSGARFELANAVGKQIEIFVENDTWQGRMLNRVNHKYRPLRG