Scaffold Ga0193738_1000033

Overview

Basic Information

• Taxon OID: 3300020020
• Scaffold ID: Ga0193738_1000033
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 93201
• Total Scaffold Genes: 82
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (18.29%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8827
  • Long. (^o): -106.9107
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012727	Metagenome / Metatranscriptome	278	Y
F031542	Metagenome / Metatranscriptome	182	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193738_10000335	F031542	N/A	MRVFEEREKKHLNPTRKNAELLIVEPPRSLFKVVVNNYRQKEKSLEQEEIVETMMSEDQGLPPQPAGYLKYPKYDWF
Ga0193738_100003363	F012727	N/A	MIFAVLFFMFLTPPTLEELKESDLSDLVDMLSKQSIEYSRIIKLEGISSKSNAVKELILNIQTVIESKKISEKSKITR