Scaffold Ga0193738_1000009

Overview

Basic Information

• Taxon OID: 3300020020
• Scaffold ID: Ga0193738_1000009
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 151730
• Total Scaffold Genes: 134
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (12.69%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8827
  • Long. (^o): -106.9107
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006472	Metagenome / Metatranscriptome	372	Y
F010546	Metagenome / Metatranscriptome	302	Y
F012355	Metagenome	281	Y
F027225	Metagenome	195	Y
F028948	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193738_1000009115	F028948	N/A	MEKSQEFLKREFIHLLSDTLALLGAEKRLIEDLKASEENPFSLKVIEKIRRYNREQKDKTKDAAALLNTTFSYPS
Ga0193738_1000009123	F027225	N/A	LKRLILIWLFAMCFFFVFFSCKQSEEKKELWAPIIDFFSPDMTYYPDIKKFPFPDSLRLVSLESFFSNQDKKPILTDSTIVFFDNYRVNGQKLCCKKDTLEIFIDSIKGKKYLFVIGEYISVLQSQNAPDSNFRIRKTPGSIPLWGIQLNVPYPVTKFKGQYEKLGAKFVEIDPRSDEVSRQKWNENDSILVETIQFNNSTDRFITAVHKDMNENEMNSIIDQLKNKFPTIIYEEAIQKDGDGKPFKVIRMLFQGIAIAFKQSEENVYSFMITDYYETLKLIINNAGVGYVFTDDIKIY
Ga0193738_100000946	F006472	N/A	MAIMKIAQHFRAFLERHNYLQLPQIGKFEVVGENPAAAESDHSRKWINFQPDQNQSTDSELVTFISKNMKVESNITASDLSCFISNIKEMLILGFEVEIPGIGYLHFEPGNVLRFSGKNIYKKTIQKGWKRIPAGISTSFWL
Ga0193738_100000987	F012355	GAG	MKKLFILFGCVFISQLFFAQTKDLPDCKTIKKELAEVHNSFDNIVEKFKSKEDKVSLVKTYFSDFSICSEKGKVKDYGRNIEFIFNFTDAYYNGSRIKFRDFYKKIFKKMKEEFANTHVYKVSKEQSGKSSYFYEKDKEMASSKRNIKLLLAYKDPVDETTAYSVSLIFEYYPKR
Ga0193738_100000998	F010546	N/A	MDPIQISFKHNGVTYKDCYFTKITRNDGAASFWHLYDCDNYFLGSLKFIDQWTFDVNRKSTGLDKLAEYFGEFVEKANRSKAA