Scaffold Ga0193734_1000240

Overview

Basic Information

• Taxon OID: 3300020015
• Scaffold ID: Ga0193734_1000240
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8492
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9228
  • Long. (^o): -106.9541
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006999	Metagenome / Metatranscriptome	360	Y
F015372	Metagenome	255	Y
F040281	Metagenome / Metatranscriptome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193734_100024010	F006999	N/A	MPIMKRLALLGLIILMPALLRADEKETMLQALGQFEQAWRSTTPCEVSSNACQTREIWLAQQAAQAANQYLNTPDAKESHWRLVAQSVIKYSQARSEAYAAYVRARNQDPDAAEKAYHSIVDPLEQDFKGQLKTTLQSDENSPDIAQRFGLVDF
Ga0193734_100024012	F040281	N/A	VKTILLAATALAALTGCQSATEKQRLEAEAQSSALANCARIRVVSSGCGGNSGLTEVYVDNMHKNHAVRATVRKHSHEGDDDTNYAIAEGGQLFIGCGGGGTSFDVVGCQVLKGEVEKGD
Ga0193734_10002403	F015372	GGA	MDDIQKRADDKAWDEKQNRRISDANRRIEDRLTGEALAALHGLHVSPDDEPSCDVDEMSDVDDQETLRNKIISRLVQTGNAISRNRDLPDDVRQRWTATLQEVYASDAKSVTLLRELRRELDSWEEIDPQSALSLVYSAMGAVATMIETYQRRFNTR