Scaffold Ga0193732_1000001

Overview

Basic Information

• Taxon OID: 3300020012
• Scaffold ID: Ga0193732_1000001
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 578575
• Total Scaffold Genes: 533
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 381 (71.48%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9223
  • Long. (^o): -106.9536
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008187	Metagenome	337	Y
F011244	Metagenome	293	Y
F015389	Metagenome / Metatranscriptome	255	Y
F016952	Metagenome / Metatranscriptome	243	Y
F029060	Metagenome / Metatranscriptome	189	Y
F030449	Metagenome / Metatranscriptome	185	Y
F057627	Metagenome	136	Y
F068077	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193732_1000001260	F011244	N/A	MLAMPPINAENDMLREKLHTLDAEFDREMRARGFDPAQAENVALPSHLAALYAEREQIRAELEELTRGENQ
Ga0193732_1000001288	F008187	AGGAG	MITKRMTVLLAILIPGLLPIHSSPPTAATTTHRPNTVYLFVEIEAKVYRKDIKISSANPAERRWYISNVVVQPEDVPTYSLVKQKIMPYFSRNVMDPFEARGFALDYGEQDVRLNGESSYANYESRERAEEERKKAIEYRKGQSGNIYSFELVFSGTPKGEETSKPKLIYRDKEQLNYGETK
Ga0193732_1000001463	F030449	GGAG	MRKVKVLLMSLACGAALAISAAGLTLNPPQNTNQSGEACCDMENCCKAGDKNMSCCKKKTKRGKNAHACCAGKGGAACCCKGDSCPMPNKKTGNANGN
Ga0193732_1000001474	F029060	AGGAG	MKLVVRTFVTMVICLIVIPTALGRNPGAQVAANVAGIYENFTVGKESGDLEGMRVVIVQAGGGYYAIVQIAQGGAEDPKPEFVQATVKGSNVSFAVGDEKFTGAATATGLRLKNSAGGSQVLKRKACSSYFK
Ga0193732_1000001521	F015389	N/A	MNKSNVVSIGLRAKTARAIAVVLGGSSDAPTVLKKFEMALADPKIAATSQPYHEVMDLPWEESQQAVRKSARVIEAIARKSLARLINELQSAGMKVSGVGIVGAKDRDLARLGNFHIRAHAAEGVLFRRVLDLAADANGLKRRTFPDREFAELAANELGSGIKQKLNDLGRTLPPPWRTDEKQAATAAWLVLHDRRK
Ga0193732_100000172	F016952	AGGA	MRTTSNERGGARLKFIIAITVFAVVVYVGYMYVPVAVDAYYFKDAMQNKVNAAATQGYETNWVKDQLEKSRAEFNVPPEAIITPGRQDNQMLVRVQFTRPISFPGYTYNYEFDYTAKSTTFLFVK
Ga0193732_100000195	F057627	AGGA	MDPTIIAAVAGVLGVILGAVIGGVFALKATKRQVEVMLLQSRGDVNERLYSQSLVIMKFFAESPELRPYFYDNKDLSKAPSELEKLKVLSTAEMVSGFMELVALQLAEQPAEIQPRWKAYIVDGYNSSAVLREHIATCTAWYADDFLRLLPASIEPPAHTTSGKPAA
Ga0193732_100000197	F068077	N/A	MDRSQRTVDSLKLLSDWSKWLISLETIICVSLWPKLTGKPSPSGLMYAGWMSFWASIIVAAILLLCISFFVRRVDDSGDRDMKKVWVLVGLQYACFLAGLFCFALNVVLIWLGV