NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0193740_1012842

Scaffold Ga0193740_1012842


Overview

Basic Information
Taxon OID3300020009 Open in IMG/M
Scaffold IDGa0193740_1012842 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1341
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8826Long. (o)-106.9101Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085973Metagenome111Y
F090036Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0193740_10128422F090036GGALSDWITVEDVALYLDLPGAADDNLTASTAAAKAAVERRRADLDYNLADTFRDVHADVWLGAVIWAGLIYQTRNAPSGFSGYGDETQLYDALGARRAEVMRLLGWRRPVVA
Ga0193740_10128423F085973N/AMIRPLELTAATAPANRARVALVELLASAGITASSDAGAFYPQPLGVLVGLPTLVGRTLAARTFTIPVLVVSGDPLNTQHAVDSIYALADDVAGAVRTIAYRPTSYRGSANAEPLPAVEIEATVTVTETEET

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.