Scaffold Ga0193735_1008389

Overview

Basic Information

• Taxon OID: 3300020006
• Scaffold ID: Ga0193735_1008389
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3279
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9228
  • Long. (^o): -106.9541
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005793	Metagenome / Metatranscriptome	390	Y
F008703	Metagenome / Metatranscriptome	329	Y
F091065	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193735_10083892	F091065	GAG	VQQLKNAHLAFINHYTCAEGTRPTWDQASFDKEVADITRQFTDAEAAVSKTVPARKEFIRNSANLFRRDAALVQKQHCLSPSFAANKKKQLQQNYDLLLQQTST
Ga0193735_10083893	F008703	GAGG	MSKLQDALDQIKDPTVADAKTQFAALINEGKAASEAFINSSAEQLEQWTIDVSDKKMTQDEFDNLVSAQTILAKNFVASQALAAQERAEKLTIKTAELAATKIIPLLLLAI
Ga0193735_10083895	F005793	N/A	ASYEEVASILGKPSSHDNGNVSGIRYDRYHFETRGWKAAVLFIDGKAQKLDTEKSDGSPLNVEDKKAIFEAYDVPNTGQDSKLLGWRQLSENHFMRGDGRVHIITHVTSMTIFWDDLPREFW