NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193735_1000638

Scaffold Ga0193735_1000638


Overview

Basic Information
Taxon OID3300020006 Open in IMG/M
Scaffold IDGa0193735_1000638 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11143
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9228Long. (o)-106.9541Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002074Metagenome596Y
F003294Metagenome / Metatranscriptome495Y

Sequences

Protein IDFamilyRBSSequence
Ga0193735_100063811F002074N/AMPQSSGGSTERLNTKRHTGGCQRTTSSPICLLVNPRALQFFFVAVIAPLLPTTLVRGALSNGATYSLSFVDINGNKLSTADGHVTVLVLATKSDWEKAHVVGDRIPDSCLGNPNYRMITIVRFTRKHGVIVRNVATAFIRYRMEEAAKRLQTRYDAQKIEHDAKSDIFVVTDFDGSASAQLEEPAEEVEFRVLVFARDGKLLARWSDVPSAKQLAEVLK
Ga0193735_10006385F003294GGAGMKRTLVGFAISIIICVAARWATAGDKINVPKVITKSDAEKILGVPVKDAKGRNQNGTDGYYDSEWSYHAINGEKALMFDVLYAGRKAPPHLTQTMFSVLPADGGKSTPITGLGDKAIFCPNETGMAMLHVLKGDILITIGIHGLSANAALNPEKSLATKILANL

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