Scaffold Ga0193735_1000322

Overview

Basic Information

• Taxon OID: 3300020006
• Scaffold ID: Ga0193735_1000322
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1m2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15148
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9228
  • Long. (^o): -106.9541
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000527	Metagenome / Metatranscriptome	1048	Y
F018457	Metagenome / Metatranscriptome	235	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193735_100032218	F000527	AGAAG	MRTALVIVALIVPVIALALPDDATLSRLLVGTWHGHRHDTQYRADGTWIMDPPDEGDNSRGKWRIEHGRLIETWRFNGESSDSTSVDEIIELTEKIFKSRIISQEGPGKPEGQVLPSEIFTVTRVREKK
Ga0193735_10003228	F018457	N/A	MLFASILSLLLGCMTGMFGAVYCFKPDMIVHEASDVAQRRPRLLHFALPIRPRGGRISARQVRNTGLGMLLLSAWFLVLAFMGILSHH