NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193755_1007146

Scaffold Ga0193755_1007146


Overview

Basic Information
Taxon OID3300020004 Open in IMG/M
Scaffold IDGa0193755_1007146 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3620
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9763Long. (o)-107.0041Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017192Metagenome / Metatranscriptome242Y
F017610Metagenome / Metatranscriptome239Y
F019612Metagenome / Metatranscriptome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0193755_10071461F019612AGGCGGMHHGGTGRRRLRALGACILLALIGAPDGLAGEWENMRESYDNKLRTHARRIAEIEARDRGADQEKRADRLTRDRINGIKGSLKGGGKARSLAETAEKASGDARSLIDVSREQGEYLDIVISEWGTEGAERKKLRESIATLQKNLESTNANLARAIEDAETTTTRVPRSGVPEKVGRIEAAEKERAKWLREQAALERERQQRE
Ga0193755_10071462F017192N/ALNVENATGIRKVVTASQELSASSAKLEETMRQLSASLTGQLKELANRLDTIQGKVSNLK
Ga0193755_10071463F017610GGAGMRQLLLVLLERIGRRVPHVLGSGLPLMSLALVVVGCASPSLMPEAQAVAIKHRDRALASHADAIHTAISQSGHVGALALLDAKDGRLVVLPGDSPADAWARYSASPESGAGRVSVPPVLTFVHRADVPKAPETVTQSVLQQQAQLLDAHRRVEERLGVVQREFAESKREVDASLAAARAEMQTALSSLAEDLTTVRKFVLQTAQLGWLNHGSITN
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