Scaffold Ga0193755_1002968

Overview

Basic Information

• Taxon OID: 3300020004
• Scaffold ID: Ga0193755_1002968
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5375
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (83.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9763
  • Long. (^o): -107.0041
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002852	Metagenome / Metatranscriptome	526	Y
F066978	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193755_10029684	F002852	N/A	MRDESKGSFAVIRYNLRTYVSGGVVAIIKGKSNAETTLKSLEGQQSSEDRHEGWRYFLEKTDLKAGMDPQEATSLRQVNLELRESQA
Ga0193755_10029687	F066978	AGGA	MIRPSATSFASLSGKRRILLVDTYANKRDLRAKIMRKLGVEVDCAADITEARALWQADSYSLVLVDVRNDSVNVQEFCSEIRSAKPPQTVAFLVGKPEYLAGAPGADEVLVVGKGNGHDAWGQTVAALYANACEALPRRWGFQEASWRIAAVRTLNDPRPGRTPVEKKRPNWSWTDSVKQHSGTLPD