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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300020004 Open in IMG/M |
| Scaffold ID | Ga0193755_1001319 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7570 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (70.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: East River, Colorado | |||||||
| Coordinates | Lat. (o) | 38.9763 | Long. (o) | -107.0041 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004205 | Metagenome / Metatranscriptome | 448 | Y |
| F006201 | Metagenome / Metatranscriptome | 379 | Y |
| F020678 | Metagenome / Metatranscriptome | 222 | Y |
| F029701 | Metagenome / Metatranscriptome | 187 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0193755_10013194 | F006201 | AGGAGG | MNPEEKVLLTTAFEALGPERVTRGLKATGHRWNDCFLAIATYGEPDALAREMEKSRRKKHVVAALIGVPVQVVNEVVHVWDHDEGAFRALAAEWLELNRMTARTEPVVGA |
| Ga0193755_10013195 | F004205 | AGGAGG | MEAGVTLQSQSFRLRERMEEANISHGQEIRADLPNIRVLALAGGGEGQALFCTMGPIRVREILNWGDDRPLPTDVTLEGLQVLSSGTYDVLNALVSSNGNLRLVVDGQTRVVPAASVVGAGQASAQV |
| Ga0193755_10013198 | F020678 | AGGAGG | LVALSSGGDTVTEHRRSMEGLLTHVGTADCFISLPHPALECGIVTAWWQCQMEADPAMQQQQEDE |
| Ga0193755_10013199 | F029701 | GAGG | MRELLALAAVACLDFWPGELVERRIYLTWLASRDPWFMLRTIPGTVRGVGGSVVPSSLPANPADHVIAPRRQSERLFATLLPKDAQVEVEMPDGRRFLMPRRRPRGRPALLAGLNAREAGELLAREAHELVAFGRHIDGLLFMSNGTEKLHQGRGAPRHARSAVCAHVSEATGDGLLVVVAARVVVDYCRGQHWTEARARAVIGQLLDLCVTTKPPEPEPETSEATVLTEVRKALQRPQLAPSGAEASFRLRNSN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |