Scaffold Ga0193755_1000345

Overview

Basic Information

• Taxon OID: 3300020004
• Scaffold ID: Ga0193755_1000345
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13261
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9763
  • Long. (^o): -107.0041
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005262	Metagenome / Metatranscriptome	406	Y
F005616	Metagenome / Metatranscriptome	395	N
F006570	Metagenome / Metatranscriptome	370	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193755_10003453	F005616	AGG	MIQGGENLRGEPLDFRIPRTGDRDLAFRGWLLSHAEERGGSPALTRGVDIDIYLTIRLRLVAHLCRWSLGEGQGLREEHRVAAHDSAAGLLGWLKQENAGRLDAPSKRAWVRACQAWPGLKGEAVERVD
Ga0193755_10003454	F005262	GGA	MRARLPPLLAAVALIAQAPSLTAQTAPGHVYWVGFYQALPGKAAAYNKALTDIADPVLDELVRRKLMVSHVQLAQYTGAGENTNLVILEFPNWAALDTYEAKLEEASQAVLHKSWSEATAGFAELRRLVRIEIYRRS
Ga0193755_10003459	F006570	N/A	LKPIPVFFATWALAGVGAVIGSILGHAAGKPGLFTGAIVGGVLGVAVAVGAVTKLHWLSPEDRRGALAGGIVGFGVAAPIAVTNLHTPVMPVLISGLAGVGLLLGVRVVRSWRRSS