Scaffold Ga0193755_1000037

Overview

Basic Information

• Taxon OID: 3300020004
• Scaffold ID: Ga0193755_1000037
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33846
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 26 (70.27%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9763
  • Long. (^o): -107.0041
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001470	Metagenome / Metatranscriptome	688	Y
F004389	Metagenome / Metatranscriptome	440	Y
F004535	Metagenome / Metatranscriptome	434	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193755_100003719	F004389	GGAGG	MQRHIRTAALTVILLVPFLTSAPADWDALNSAQAATSYTYRGTIRAVNSRTGTLELITGVGMSLRLVRMTTAATTRLVATGAAPRVGDLKPGDVVRAECRRTAAGLVADRIEKLAAGTP
Ga0193755_100003726	F004535	AGGA	MQARRTWLFATRGVVAAAGLVVLLALQPEPAGLIEAASGRSGSHARALILSDQARRYLSLQYRSYPTEFMGCMIGEIHGNAVIVRRIAPADVEPGHSTTTRVVPEQTCEDAGWAGTVGMIHSHPDGQRCWYYFPGTRVASSDAHSFARQAYPVDAIMCGNRVVWLSRDMVQQQVPLSDPGGQPAAPLPQQRGNRVHAGAAAPEGQD
Ga0193755_10000375	F001470	GGAGG	MSSDTNVVLVHGARLARCPLLTLVGLLALAAPLCGQARPGHFYHINYYQVRPGEEKAYDSALVEVVTPVFDELVKRKAVVSYLLLTKTAGSGPHTNVVIVEVATLSAGEGIFQRELDAASQALFHKPWSDATVRFPELRRFMHAELYTAAGQRP