Scaffold Ga0193755_1000029

Overview

Basic Information

• Taxon OID: 3300020004
• Scaffold ID: Ga0193755_1000029
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37527
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (73.68%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9763
  • Long. (^o): -107.0041
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000195	Metagenome / Metatranscriptome	1659	Y
F001221	Metagenome / Metatranscriptome	743	Y
F001794	Metagenome / Metatranscriptome	633	Y
F018690	Metagenome	233	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193755_100002925	F001794	GGAG	MKAVTFPCSGSAAEARARLEAAIDGRPWNAAGLDGWIRGDRVVVYYRDAAKYRALFRPTFIGRFRERDGKTALDGRFRMTLFARALLPIWLAPGIVCLVVALAPTQLQPQSPGFRIAFALLGGLLALMAFGRFALEWWGRPGDVDAVSQGIRAAVQS
Ga0193755_100002928	F001221	GGGGG	MGGEPFLKTLTRTTVVAGALGIVFLLAFPRHASLVSDFVDVFTVAFCFTFLAPYVDRLLLALPGIRTGVGPVVRVVGWFAGGLWCAVIARWLWMNLGRDLRELPGLIWGGVLLVALELVARRRDADSPQ
Ga0193755_100002930	F000195	AGG	MDLTVTRAQYDAVRGARHLPDVLKKVLEGARPSGGGDGYVLDLTYEEATALNELCSWNVHTNASGAVTAESKLFDDLVKAILTHPDY
Ga0193755_100002938	F018690	GGTGG	VTSLQFLWVVAVAQGVLLVALIILIILNRWFRLRRSARLQPRRRELEAVMQRWAMGQAPAAEVERALARLPVSLAVDALVTWSARVPGERWQDLSRLLAHQWWARVLRTNYRSARWWKRLECARFLSVAATPHDIGRVLR