Scaffold Ga0193755

Basic Information
Taxon OID	3300020004 Open in IMG/M
Scaffold ID	Ga0193755_1000008 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020004 Open in IMG/M

Scaffold ID

Ga0193755_1000008 Open in IMG/M

Source Dataset Name

Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	56397
Total Scaffold Genes	56 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	34 (60.71%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

56397

Total Scaffold Genes

56 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

34 (60.71%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9763	Long. (^o)	-107.0041	Alt. (m)	Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.9763

Long. (^o)

-107.0041

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017521	Metagenome / Metatranscriptome	240	Y
F024279	Metagenome / Metatranscriptome	206	Y
F037645	Metagenome / Metatranscriptome	167	N
F075926	Metagenome	118	Y
F081127	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193755_100000814	F075926	GGAGG	MADKVPCPVCGAASDGGYSIGDSTVFKCLHCGGYRLAGTVIALFEKGTLRKPDPKAFLDLVRRKRGSSREYPVIIPADLGG
Ga0193755_100000822	F024279	GGAG	MRERALVLALLVCTAAPAATQESVDTALTIQGFLQRDNEFGVWTIVVPLPLRVLGTRTYVVPVVGKPERWGRYLNRYIEASGRVTRLPERGDPSIGMEVENAKELDPPGTARGTVDRGVTLHADVTLSVIPNRFSWKDDAGSPTGVNPMLVYTILNRRAAPIFFILQNNRFLCIAVKSHEGVTVWDTTTIVPSPDARRFTMQRGGRFRDAIHFPEEAAARPGHYYAHVGICDVDDYDITAEFDVR
Ga0193755_10000083	F017521	N/A	MPDESPVLAPSRIARWFAIAAVILFTVALYFRDGRRVPPMTGTPATTGQPAN
Ga0193755_100000830	F081127	GGAG	VVGAIAFACDRSPTAVPIPTPLAARSQPGPSKKSGLIPCAQSYDSVTKLIGRQGGAFPVGPHYVFVDSLALRDTVRITIVAPAGAVRWVRFRPDGLVFQTTVDGWSALLYTNYKDCGVPTSDTLRIAQVSDSLRVLGYLQTFVKSKKNPWSQGTQFVVGLLPHFSNYAVAW
Ga0193755_100000849	F037645	GAGG	VRPRLTVLVALGCLACGGGAGPGKIAPQSPQETLAQFMSAVKDNNIPRMGTLWGSERGPATNWMKADQLRERLSVVQKYVNHAGYRVVEGPLAVPGHDNMKSFRVELQRDGGCTVVFPIDLVRTKDGGWVVNDVHLGSIPTPGLPCRA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193755_1000008

Overview

Ecosystem & Geography

Associated Families

Sequences