Basic Information | |
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Taxon OID | 3300020003 Open in IMG/M |
Scaffold ID | Ga0193739_1016985 Open in IMG/M |
Source Dataset Name | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1896 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: East River, Colorado | |||||||
Coordinates | Lat. (o) | 38.8827 | Long. (o) | -106.9107 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001947 | Metagenome / Metatranscriptome | 613 | Y |
F076050 | Metagenome / Metatranscriptome | 118 | Y |
F081014 | Metagenome / Metatranscriptome | 114 | N |
Protein ID | Family | RBS | Sequence |
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Ga0193739_10169851 | F076050 | GGCGG | MTEGDDRLVDRDGFAGSLGESPRALPDPGGLFATLQRVIDATRVVFQVDGASLALEHEDGSLRWVVVTDGAAGLLEDTQRE |
Ga0193739_10169852 | F081014 | AGGAG | VGSFTGSSRELPDQPIPTVDPEVERLAHVVVDGLIARLALEPAVPASSLLDSLAGQLEQAAALHRLGVVRRTTGD |
Ga0193739_10169853 | F001947 | GGA | MDKGRRCTCWPKPDDARPCTPQTCDWRCRACVVHGRPFYSHGDLQYLEHGTGPMAAELDRLWRAKGTMKGGTTRQGARHDIDGWRTPPRGAAGLPPPRGSRTVTDLYYPGLQDPPPGHDGRNAGSGQ |
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