Scaffold Ga0193739_1002405

Overview

Basic Information

• Taxon OID: 3300020003
• Scaffold ID: Ga0193739_1002405
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5180
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8827
  • Long. (^o): -106.9107
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013143	Metagenome / Metatranscriptome	274	Y
F051769	Metagenome / Metatranscriptome	143	Y
F095084	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193739_10024053	F051769	GGA	MNACAASGRITAAVVLAMGGLGLGLLLLGGRRATPLPVARCPIHGIAYDTELEVCPDCAKTDAAGGKGGAR
Ga0193739_10024054	F095084	GGAGG	MSGMPALYCRTCNTFREVEDWRERGEALVISLEPCGHEIRRRAGIEWPIHTVAA
Ga0193739_10024055	F013143	AGGAG	MLSRFVLGAIVGGIAVYVWGDEIRRFANTKSRTARLAAADTLKAVQSTAEGMFDSAKDQVTSTLQSGQDAIRPARANRDR