Scaffold Ga0193739_1002392

Overview

Basic Information

• Taxon OID: 3300020003
• Scaffold ID: Ga0193739_1002392
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5186
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8827
  • Long. (^o): -106.9107
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022380	Metagenome	214	N
F059842	Metagenome	133	Y
F102774	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193739_10023921	F102774	N/A	LDGTEYTKDAATGKWSEGSGTSPVNSLMDPLGNIDASLIRNVVEVDRPEIDGRKTRHLRYEADTTKMIEEMRQSAGATSQVVSNPKGTGELWIRIDDSQIVRQLVTLSMDVDGLAGLLPASASNIGKASVEMSLDMRFSNHGGAVPQITAPPVGP
Ga0193739_10023922	F022380	AGG	VSLIAGLVAGLVIAGLYLLAGNFRIQTEQLTVSGNPTLALATASVLVPLAILWGWTWVSDRWSGRSGPRLLLFNLGLVLATAAAFPLDSIVKASPNGFVFDPSVSIVAIDGVLWVLPVVAIAAILYWLFGSGKLPVGLPTLALGYLVGLPLGLLFPPAAMGAVAGTAAGHAWREPGARTLIVVLVIFIMLVAAVELPLAAATVDGPLFPLLP
Ga0193739_10023923	F059842	N/A	VIPLAVVAGYIAGVIVALLTVTAEHSRIALGSYALYGNGSIIVLVVLAPFALYPGWAWLLAREGDRRLEAALYTLGLHFGVGMLSVLEVLLYPQSTDATLLGAAPGFLLTGALFVVPAALLAAATLWLIRSGRLAMTSLTAAFGIIIAGLLALLFGAGLGILSGGAVALSLQRPERRVAIGLVLLVACIVVGNAPFIPALFTPSGQPL