Scaffold Ga0193730

Basic Information
Taxon OID	3300020002 Open in IMG/M
Scaffold ID	Ga0193730_1000058 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020002 Open in IMG/M

Scaffold ID

Ga0193730_1000058 Open in IMG/M

Source Dataset Name

Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40497
Total Scaffold Genes	42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (52.38%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

40497

Total Scaffold Genes

42 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (52.38%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9223	Long. (^o)	-106.954	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.9223

Long. (^o)

-106.954

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006858	Metagenome / Metatranscriptome	363	Y
F074624	Metagenome	119	Y
F087261	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193730_10000581	F074624	GAGG	MTNEQMERKMEFIVETLARVAVNDEKHEMRLSRLERVMKLVVRAGLREREARREKHSAFDDQFSQVNVALKELAEAQKRTEESIAHTDKRLDGLIDFVRQQQNGRSNN
Ga0193730_100005821	F087261	GAG	MKSLKTLNGAILLMLLTALPAIAQNAQVTLGKRASRIPKPCELLVPASIEGTVDIPALVKEAYCKGAGDMMTEYSYTMNSVTRSKDKKGQTREESTTYEVFIPTLKSGTQGKGILVVTARNGVPVPADELEKARAQAGERLEKAEEKNARETGTPPEGDPNVKGMLPLGMYTHSTNNRSSIGSKGSAALAIHTFLKTCVLTLKRREQHDGRETLVFTFTPRPDSQFSDNEKYIAQLTGEIWIDAQDRIVSRLAGWPSLSADSSNSSNPSITPVERPPAVYVEMMHLPEGVWLPQVIRINGADYQKLFDGITKDTTSTFSKYIRFSTEIRDVKVNPSDNH
Ga0193730_100005825	F006858	GGAG	MPRHKHRISQQLNHRRLSIYSILAIALISTLSVFGCGKMGGGNSIHVKSATTGDKDLPVKSSYAFAVTKTFTDVTGKMTTASAHNVYAANYDLDANNFAMSMDKPLTSDDQVRVVFSLIGDEGTNDKSPPKAGTYSAKADKYMKVESVGLVARKGGADVKSWLDRSMLTGEVKVSSASADEISGDVDLTSGDTSIKGSFTAKVLKRK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193730_1000058

Overview

Ecosystem & Geography

Associated Families

Sequences