Scaffold Ga0193730_1000037

Overview

Basic Information

• Taxon OID: 3300020002
• Scaffold ID: Ga0193730_1000037
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47167
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (78.72%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → Pyrinomonas → Pyrinomonas methylaliphatogenes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9223
  • Long. (^o): -106.954
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F024337	Metagenome	206	Y
F082455	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193730_100003715	F024337	N/A	MQILNQLETEPIPIEEEEQRHTRRLLIGTLCALILTGSVLGGYLYLRKRHERQVTAAVAAEKIEKEKAKVEVLVDEATIDGKKSVLAGTIHNISNETLRNVAVELQLRRRSGSTVETRIVMPQVTELAADASTRYSLEVSVQDYSSATFSRVLAGDAHLAIAFKALPGAERPPLPAPASKTIVVSRPAPRGDEFLNTEKNPGRVP
Ga0193730_100003732	F082455	AGGAG	MISNKCCRVFLLALVCAIAFAAAPSVLCQEQSSSTRAAVRDDDTNLDTQLYLVLATNREIDEGKIPPALDPIMKRLREALPFKHYSVAGTFLNRVKNNGHLDVSWVGSPFLMSSTSSAAALSNPSFNQFAAVVRLATDGNGNDIVRMNEFRFGAKVPIITGQVTTSNASMGVAPVSQVVYESVGLHTDISMREGAPVIAGTLHVGPQGDAIIVVISARRAN