NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193731_1092458

Scaffold Ga0193731_1092458


Overview

Basic Information
Taxon OID3300020001 Open in IMG/M
Scaffold IDGa0193731_1092458 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)783
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9223Long. (o)-106.954Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001356Metagenome / Metatranscriptome716Y
F016609Metagenome / Metatranscriptome246Y

Sequences

Protein IDFamilyRBSSequence
Ga0193731_10924581F001356N/APDLKYRQVQVDALNKGRRGKHHELVVGIFRELETLSPGSAIEIPLESVNIGLTNLRSAVHRASISQGLEIGTLADEKNFYVWKKTEN
Ga0193731_10924582F016609AGGAGGMTEYKWHEAYRSAVLETDWSKIEERIQSADAALRERKHEFDLDHGGTPEENQAIEDAARGLSMLRMDAATWLQRQQPK

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