Scaffold Ga0193731_1028135

Overview

Basic Information

• Taxon OID: 3300020001
• Scaffold ID: Ga0193731_1028135
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1478
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9223
  • Long. (^o): -106.954
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F044063	Metagenome / Metatranscriptome	155	N
F052710	Metagenome / Metatranscriptome	142	N
F079018	Metagenome / Metatranscriptome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193731_10281351	F044063	GGTGG	VALTQFIVLKRKGSWAVKSNDQERSFSAQLEAMHAAIQLANECGKNGKPSVVLLQTAKKQFDTIWTYGES
Ga0193731_10281352	F052710	GGAG	MGGKYSAEWWEKIAGLSRDLPAEDPVNVVDHLIQATAHGARSPAKNVKRSSQGPVGPKRERSLAD
Ga0193731_10281354	F079018	N/A	PTGWLDSMPITPFLDSHNFDPETRRVMGIAFEMARVALRLSDRTDLINEIIARSIIELAKAGQRDPDLLCEGALRSFREQRGSGDDHPFPPLPGSD