Scaffold Ga0193731_1009732

Overview

Basic Information

• Taxon OID: 3300020001
• Scaffold ID: Ga0193731_1009732
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2464
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9223
  • Long. (^o): -106.954
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001353	Metagenome / Metatranscriptome	717	Y
F004910	Metagenome / Metatranscriptome	419	Y
F043561	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193731_10097322	F001353	AGGAGG	MATDDSPSPHIPYPQWQNEYQAALVELDREKLPERVAAAEASIYKRLQQISQGSDEQAERQAIEDALAGLRILKRDSLGFRLGKEVVTQRCDKPDFELC
Ga0193731_10097324	F004910	GAG	LTTNYSWQDSYQAALLETEWTKMEERVQTAESEIHKRRLVLSQGHGGTPEERDALVNATNGLGILRMDVASWLERQGFDAVDKRQGQR
Ga0193731_10097325	F043561	GGAG	MNTAVCKGLDTGSWKDLYQAALFESDLDKLTERIAEAETALVMRARELFYASESNSGEEEESMDYAMCALHALRSSLKRNPTVIKERMMAAA