NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193731_1000230

Scaffold Ga0193731_1000230


Overview

Basic Information
Taxon OID3300020001 Open in IMG/M
Scaffold IDGa0193731_1000230 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19444
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (71.43%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9223Long. (o)-106.954Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027294Metagenome / Metatranscriptome195Y
F069965Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0193731_100023016F027294GAGMSWTFRAEEHEGLLQMPQEGEVPNMSVFSGFAILITVVLVSLGIFVLCDSIARRSAEVSDSVLAGAVLFSLALILLYFLPRPALT
Ga0193731_100023019F069965N/AMPLANPPHRISLFCIFCAFSSAAAVAQSTHYSVKLEPDFERQLLRGDETIEFQADAGEIEWQKQGGLRVVSANIANGEVTVAEQAMRVRLRSGGRHSLKLKYTAAAGRGIQWFAGAAPQREYSRDSGFATAFYCDAWMVCDNSPGQRATLRLEIVIPSKEGGNMGFRAVGPGRRGREWRSRDGDHFVFEQGDPVQTYLFSFGAARLALDGMFSIYAQRMDANKAAFAKTADAYDFLRAPASVDPLNSHYTQAFMPGRSMGQEAAGMVLVSQDDLSDLVDKMTGN

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