Scaffold Ga0193692

Basic Information
Taxon OID	3300020000 Open in IMG/M
Scaffold ID	Ga0193692_1000031 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020000 Open in IMG/M

Scaffold ID

Ga0193692_1000031 Open in IMG/M

Source Dataset Name

Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40665
Total Scaffold Genes	47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	44 (93.62%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

40665

Total Scaffold Genes

47 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

44 (93.62%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.9136	Long. (^o)	-106.8951	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.9136

Long. (^o)

-106.8951

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017350	Metagenome / Metatranscriptome	241	Y
F020724	Metagenome / Metatranscriptome	222	Y
F039366	Metagenome / Metatranscriptome	164	Y
F042463	Metagenome / Metatranscriptome	158	Y
F044001	Metagenome / Metatranscriptome	155	Y
F062856	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193692_100003117	F044001	AGGAG	MPKRERILFAPSAPVWKVRDIIEKLGGVGPLTDKLMARGFFPPGVDTIQGWSTRNSIPGAWAPALFALAQAEGLIETPMDALVRDFKLDPKKGRARRMIENG
Ga0193692_100003118	F062856	AGG	MLFCVIQLPYTDKRNTVMAAKKTQVERPNIHPADELAATREEIKIMQGRADELRDMLLAEGASLEGDQHTAVIIPGSRETLDRKALEETFGADVIAPFLKKTHFKTVKLQEK
Ga0193692_100003131	F039366	N/A	MSGSARPNDQMHLPGLGVPVDPWTGHALPPVVTQRLKKLKEAEHAFRLALHELDGTTEGSLPGNRHMALAFEALDQTRMWAAASIIEGG
Ga0193692_100003132	F042463	AGGGGG	MPVYVLYKGRLIDKRDKPAEYRGPASDLPAPAVQSFAAYPSPIDDTTISSHRQRDRDLHNSGSYDPRDTPASFRKARDGRRKQRSTSLT
Ga0193692_100003135	F017350	GGAG	MSDTPTLVRFFSGWERDGEGPDGLPLYREVIRVRMDRPPFLSLEREAEEADFVDHPGPYELYQKTCEGRKRIVGYPLALWPACAPHIFQMCAIRDIHTVEQLAQVVSGKRRSEAVKTVPPDVLELADRAVKMIEMHGKAGQYEEIVNRLQGELDAVKEQHTEAMTTIAAQKTLIDTLRMKVAV
Ga0193692_100003136	F020724	AGG	MPRLATIASAISDASLEIGLIQRPVTLVMNTADQDIAQMLALLSNVADELMLDPPFRDVLGDGNWLSDSTGTVRKDRPTADDDLLLFDPRLAVNGLKYRFLKAKGLEYGEEQRDFITRLNKIAGRNAPVIDLNEDPGRIQ

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193692_1000031

Overview

Ecosystem & Geography

Associated Families

Sequences