Scaffold Ga0193692_1000026

Overview

Basic Information

• Taxon OID: 3300020000
• Scaffold ID: Ga0193692_1000026
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43687
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 68 (97.14%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Ochrobactrum phage vB_OspP_OH (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9136
  • Long. (^o): -106.8951
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F060877	Metagenome / Metatranscriptome	132	Y
F080575	Metagenome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193692_100002645	F060877	GAG	MARKKPDTTPAPEAEAPLALSLGEAIEAQTVAIDPEVAADNAKARSVVAVAYKDRYAHRAKDAGLARKAAQRSSWDWLAQTLAGECLGEKDRIDIDRFLAILEANGVDHSRWQNRSKGWEGRLRMTGRLALQRVVAEAGTLSLPDGETLEAPAEWVAKHQH
Ga0193692_10000269	F080575	GGA	MAYRSGDPTVMLEAGIEVTTAKAYLITPTMGPKREVWVPKSQVVEISEADDLGNRMFTVTEWWFNKAELRE