Scaffold Ga0193710_1000068

Overview

Basic Information

• Taxon OID: 3300019998
• Scaffold ID: Ga0193710_1000068
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9771
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → Gemmatimonadetes → Gemmatimonadales → Gemmatimonadaceae → Gemmatirosa → Gemmatirosa kalamazoonesis (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9825
  • Long. (^o): -107.0101
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002984	Metagenome / Metatranscriptome	515	Y
F045028	Metagenome / Metatranscriptome	153	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193710_10000681	F045028	AGGAG	MISNRKFASRWLIPLVLLGASCSDPSPTGADLTTPGMLAGKVKSTAVSLVQCARLPYDSVAQVIGPAGGWFIVGANVLWVDSLALSAPVKISAVAPSDTFRMVRLHPDGLVFKTGTHGLGAVVATNLDGCRLRHNTLPRIANVTDAMALVEYVESPVPAVDSMLVAR
Ga0193710_10000682	F002984	GGAGG	MALRRALIPLALLAALAVVASCGDPSPTGVAAFQRGGRWNSASHKKGAGLVPCLQTYDSVTQVIGPAGGLIAVGHHYLWVDTMALADTVSITAVAPADTVRWVRFQPDGLQFRTNGAGWSAVLATTFTDCGLPTVDTLRIAQVTDSLKVIRYLGAPDSTWIQSTRKRGVSQIQYVAGVLHHFSQYAVSW