Scaffold Ga0193711_1000003

Overview

Basic Information

• Taxon OID: 3300019997
• Scaffold ID: Ga0193711_1000003
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 75501
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (70.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9825
  • Long. (^o): -107.0101
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002765	Metagenome / Metatranscriptome	531	Y
F063430	Metagenome	129	N
F068627	Metagenome	124	Y
F068642	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193711_100000348	F002765	GGAGG	MSRLKALAGVTATAVITLVGWSCDANRTAVAPPIGRPLLHYDVFACVPLKMTGGGRIDYPPGSAEKNPPASHEFETFGAHVMGSGQADANGTCLADKGALEWVDHRPEMRLNGSPLNLHATSITFAELATDTDCSEGAVHWGGRLRVQNTGQEELQFEVWDCDNGEPGAGHDGFGIRVWDPIDGIGLYEVTCFDPDLPPAEPSCTLTGGNRQFHPTH
Ga0193711_100000373	F068627	AGGAG	VSVGERKDHGLRLERAPATVSTIEPLLTAAEVGRLLAIPTKRVYDVVGHLAVQLAPHTLRWRLSDIVALIEARRRSK
Ga0193711_100000374	F063430	GGAG	VGRARPDLITVLEENPPGPNAGITLLRRVRSREYRTQIGPRGHLSQIEAAAFLGKSVMAVNRYVRVGLLRDTTRYGISTIRLAELRRFRREYLEGGKGGRLRRNAGAERRRRTTS
Ga0193711_100000375	F068642	GAGG	MRVSSVQKMPEALRRHNEEQQRDPEDVVSSLGRRVRVVVLWRQRDDDPERWIYLERMQPHEFSLETVRVRWGGGAYRIRVFGPWDRARRQEKYITQVAFWIYRGFPPTPALRARLRDAASDR