Scaffold Ga0194032_1000166

Overview

Basic Information

• Taxon OID: 3300019938
• Scaffold ID: Ga0194032_1000166
• Source Dataset Name: Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW8Nov16_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7488
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location

• Location Name: USA: Delaware
• Coordinates
  • Lat. (^o): 38.7906
  • Long. (^o): -75.1638
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016273	Metagenome / Metatranscriptome	248	Y
F018369	Metagenome	235	Y
F046382	Metagenome	151	Y
F058152	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194032_10001662	F016273	N/A	MNQAEEAILISWRLQQWYEGMVLDPRAMQDLQDAIEMLKKLTKKVTK
Ga0194032_100016620	F058152	GGAG	MIDYSESLIKITSLVRQYRKLVLKGQFDAAADVAVDMQIAVVDLQEWSEAQCIETPNS
Ga0194032_10001668	F018369	AGG	MKYSYIQLTDEGKRELMRQLTYELTDKKIAELMDQFADGVKLDSNGEPYIKIDAEDVENCVCPMYTHFIDINHIETVTANEEDYE
Ga0194032_10001669	F046382	GAGG	MNKHNWPFLTDLGDPNWTGRTTRTMRNQTRYSAADERIPPIAWVVGLLMLALVFGFFPLLSVLMT