Scaffold Ga0194032

Basic Information
Taxon OID	3300019938 Open in IMG/M
Scaffold ID	Ga0194032_1000004 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW8Nov16_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300019938 Open in IMG/M

Scaffold ID

Ga0194032_1000004 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW8Nov16_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	37834
Total Scaffold Genes	67 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	62 (92.54%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

37834

Total Scaffold Genes

67 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

62 (92.54%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	USA: Delaware
Coordinates	Lat. (^o)	38.7906	Long. (^o)	-75.1638	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Delaware

Coordinates

Lat. (^o)

38.7906

Long. (^o)

-75.1638

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015169	Metagenome / Metatranscriptome	257	Y
F020685	Metagenome / Metatranscriptome	222	N
F022639	Metagenome / Metatranscriptome	213	N
F025991	Metagenome / Metatranscriptome	199	Y
F042310	Metagenome / Metatranscriptome	158	Y
F059920	Metagenome / Metatranscriptome	133	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194032_100000412	F020685	GAGG	MSLHINMRLGIGFDIEHNDNICHVVGDEEGRFIAAYEGLLIKIPFFSIYIGEFSELDDEVLEIQD
Ga0194032_100000419	F015169	GGAGG	MEDKQYYHFKKTSSRPSVTTTSEHFYVCSEDARWDDVMRQFAAFLDSCGYVGVYEKVDLMLENYWDDGK
Ga0194032_100000432	F042310	AGGTGG	MAKLEVIKQYGYNEHGVCINPFGVKPLWVQKLAERIRCNHIVTTAEEAPF
Ga0194032_100000437	F025991	GGA	MRCSCCNVMLTDFETTMRRASNSEFMDMCEKCLSTIEDDVKVITREDLRNEVGTDVANYIDCFDLTRGYDE
Ga0194032_10000045	F059920	AGG	MRHSVGKQLTAGVTNTIFTVPQGYKAEVDMLFISNLDANNKTTTAYWKHAHDPSHEIKIIDAYPMASHTFLQFSNGSIVMQQGDSFVIEPEAGATQSCIITFDLRKEPQTVAFDGE
Ga0194032_100000461	F022639	GGA	MPKRIYEFICGDDHLTEAYIDSELRTTKCKVCGQPAIRIVSKPMVKLEGVTGDFPGAAMQWERKRNEKIAQEKKSAAQD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0194032_1000004

Overview

Ecosystem & Geography

Associated Families

Sequences