NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194022_1000689

Scaffold Ga0194022_1000689


Overview

Basic Information
Taxon OID3300019937 Open in IMG/M
Scaffold IDGa0194022_1000689 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW29Aug16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4573
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (91.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046340Metagenome151Y
F049291Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0194022_100068911F046340AGGAGMSDNYDSGFDLVLSDYERRDLIAHYETDALVDYQSCDDDDMWYGYQIGDRMFDLNVWTDYGGIPDKEKIVCTVYECDWDGKQNNWKTNCRHSWTLTEENDK
Ga0194022_10006898F049291AGGAMRVNTKKMRTKKVNRKAPRWQSNRIKEQSMRVTIINRAFDLSEPPSEAIASHMGRRYP

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