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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300019890 Open in IMG/M |
| Scaffold ID | Ga0193728_1005975 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6158 |
| Total Scaffold Genes | 8 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (87.50%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: East River, Colorado | |||||||
| Coordinates | Lat. (o) | 38.9225 | Long. (o) | -106.9538 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005865 | Metagenome | 388 | Y |
| F009563 | Metagenome / Metatranscriptome | 316 | Y |
| F083098 | Metagenome | 113 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0193728_10059751 | F083098 | AGAAG | MEDGINPDRKKQSQSFLWLQEIDQILIVGMKYGPKGTQEAVKRVRQLTPQIVPAQVWHRMRHLREKERGKIATPVDWSEAAIEILRNGYRSGGRKKTEAIKTVRALYPGLAGYVVSRFARNRGWLDAEQEPKRKDDRRPWTREEEQELFVRAGYEPVKAIAKKLKRSEQSVRSRLKGRAINARVT |
| Ga0193728_10059752 | F005865 | GAGG | MPAPEPGREWVLSDANPRSESASESELLKAARSAWPKALAHVRQVQSQNPLDDDRILVAEVWESVLRSVSRTLDRMNGRRGEIGDLEAYLLGSFYHRLRRALKKEQRREETIQLVSSVQELELLGRASHAEEHDIERTLYAQEILDRMDAWSRKIWVAREYGYTWKHIGRVLGIPGDSVMLRFRRRMKILRARLSGGR |
| Ga0193728_10059753 | F009563 | AGGAG | LKGIAQGRVSLTEAEPWLDHLSSCSPCFQEFEEFRRQSVIQRRRVLTWAAASAAALLFAVGGWLWVRAQHSVETTDTAVLDLRERSVARGQSQSETGQAVLEIPRTAKHLVLDLPIGSKEGRYDVGLLTDTGDQPLRATGMAELHDHIMGLRVDVDLRGIRPGEYSLGVRQTSLEWTRYRIRVF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |