Scaffold Ga0193751_1027067

Overview

Basic Information

• Taxon OID: 3300019888
• Scaffold ID: Ga0193751_1027067
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2741
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8924
  • Long. (^o): -106.9111
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004416	Metagenome / Metatranscriptome	439	Y
F009659	Metagenome / Metatranscriptome	315	Y
F077862	Metagenome / Metatranscriptome	117	Y
F084749	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193751_10270672	F009659	GAGG	MCCGCWSSIPITVRRDSAVKLIDGLAGESPASADYPVGTVVISGDGAGDQTVGSPDVNVLDGWTQVWSAPTGGQAKQQVVA
Ga0193751_10270673	F077862	GAG	MLFHNMSSSETTGNSSAALAQYFTENSGLQLGIKVSAFPSSSHSDSGEVCVFEA
Ga0193751_10270675	F004416	GGAG	MLLTSAGVIPKSQLEEESALLRCKIEELNRNTVRLIAETEKLVQESKQLSTQMKSLENACAKPRWPLTH
Ga0193751_10270678	F084749	AGGAG	MKRILAITLLFTAVALVASAQAKDVPKDLQQTLISLDKEWGNSGTDTAKLDKIYGDNLIAVGTKGEAQDKKQLIADNVATSAGVQNASYVADEYK