Scaffold Ga0193751_1017243

Overview

Basic Information

• Taxon OID: 3300019888
• Scaffold ID: Ga0193751_1017243
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3634
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8924
  • Long. (^o): -106.9111
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F002560	Metagenome / Metatranscriptome	548	Y
F007596	Metagenome	348	Y
F036872	Metagenome / Metatranscriptome	169	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193751_10172431	F002560	N/A	MVEHNPPPHADRVPLIPLPIALYVSDGLVFELYDGGQPHRRFSIRWERLVPTKQAAPEAASDGPQTGSRAHQE
Ga0193751_10172432	F000208	GAGG	MRIRVTTRADLYEKRKQEHIERGYRIEDERPIPVNGLCSFIAMRKMPVSDTVDELVAQAINGGRGSHGDW
Ga0193751_10172433	F007596	GAGG	MSLRIRFRFDGRSSLHLRYDPARDGRRQHSNCEGCESLYVIHLYTKIAKRRAENENGILVRTSSGREEQHAIDEPGQLSNTKNK
Ga0193751_10172436	F036872	AGAAGG	MKNAYLRFGWLTFVKSTEKTTTSIKLRLDRFIGEVLPDPPRQAKAHMISVVGGDTQISAISAAISVGDRFMVEGPDVQPIRVCLERNPQCFKGSIQLAGRKKPLRHLIGLSEEFASSNASAGSGRRMLAGSDRRFVWSSIAHTYGIPGIPEWAEWFADELNTHRAWIHALGIGCNPVVVKGEKEQFLDWLSWGVESGAIRFPAETGSIRWPSVNLRDVFPQAE