NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193751_1004594

Scaffold Ga0193751_1004594


Overview

Basic Information
Taxon OID3300019888 Open in IMG/M
Scaffold IDGa0193751_1004594 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7868
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8924Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006637Metagenome / Metatranscriptome368Y
F007700Metagenome / Metatranscriptome346Y
F020262Metagenome / Metatranscriptome225Y

Sequences

Protein IDFamilyRBSSequence
Ga0193751_100459414F020262GGAGGMSIKATVVVKKETKVDPKKPNDKAYYASLSVLNEDGKEYGLPRYLSEFREVAVLLKREAGVTHEQLHERFAAYERGEEISFPLTLESGEAIKNLGFDPKAAA
Ga0193751_10045943F007700AGGCGGMERQFIRGTKPSCETLDRRKPVEAQFFCNGMIFSFCSPIIAGMTGLNLGLPTAWVVKCKKCGCTINCRAIDPQVEHSEPDKAEPQPPDTVIVTCSCCWAAYRYNPAEVFKGPPGPSTNCYERGKPNNKEEKKPNAVLLIAASLIAAVRLNREEIKSSPIVYSKIADSIRLAEMIQSRLRG
Ga0193751_10045944F006637GGAGGMPTCPACNHDVATPFFLNLDAWRWLVCPHCKARLEMKPPRSVVLGPLMAPLFVLARRGRVFEVIAFVFMFATIYLLVLESVRPKVQLRKKPLPKPTIRLNIDGPSN

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