Scaffold Ga0193751_1002126

Overview

Basic Information

• Taxon OID: 3300019888
• Scaffold ID: Ga0193751_1002126
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12202
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8924
  • Long. (^o): -106.9111
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001932	Metagenome / Metatranscriptome	615	Y
F003314	Metagenome / Metatranscriptome	494	Y
F040783	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193751_100212612	F001932	GGAGG	MPRKLALWFVLLIVGFLTGFILQYARLQQAQQELSASTKQSGSCQAREQLSQLRDIATVMFLEAVQKNYGKAGEYSKEFFDQAQRIQSSTEDPALRTLLRDTLATRDQITADLAKGDAGALSEMQPLLSKIEQTAKH
Ga0193751_100212614	F003314	N/A	MTTKTIPAYLEDERQKGSDTQLRTEEEAARIQPLRHGHHRTAKQPELAMPSAVKTKARKTAVATPKKPRTARKTAKKARKVA
Ga0193751_10021264	F040783	GAGG	MKIEKATAGSGTTDEAKKSIVASIEFAVRASLHEEYVDADFVHSILGKISAKSEDRGNEEDAGYIKASLVQFGAALDHGISTERLGDGIDGNIAAYWELLFDLDTGCWKEEVQDEYEASGCDLLIIDCMEISPKFRGTGIGPIAVDRTIDLFGPVCGLVACKPWPLQLTPAFARDRKSLNRLKPPGVGPDEAVRKLRAYWSKLGFWPLGETGIYLLGIAQRESNGSRKKSETLAGAASDLVGRRVC