 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300019888 Open in IMG/M |
| Scaffold ID | Ga0193751_1000869 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 20861 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (75.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: East River, Colorado | |||||||
| Coordinates | Lat. (o) | 38.8924 | Long. (o) | -106.9111 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001036 | Metagenome / Metatranscriptome | 796 | Y |
| F004091 | Metagenome / Metatranscriptome | 453 | Y |
| F007640 | Metagenome / Metatranscriptome | 347 | Y |
| F017355 | Metagenome / Metatranscriptome | 241 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0193751_10008692 | F017355 | AGGAGG | MVRKLFTLLFASVLVFALSTPVFAQEGSKPAEGKDVKQDRVEGVITRSNKDKSTLVVRNRGTNVEKTVQYDSSTQWTSQEHHSKTVNTIDASQVKDDDRVICLGSFDKDGILHATSISKRLTR |
| Ga0193751_100086920 | F004091 | GGAG | MKPALFVLCLLSTSAAFAQYLGGASYISSEPQIYGFPSHPAHAAYAPMSQEQNVLAATSYSSAQGERLPSDFPQPESVSLGLAARELRQQHAQVKKSPVVWVNQ |
| Ga0193751_10008693 | F001036 | GGAGG | MKVPLTLLSLVFAGLVLAAMPAGATQEAAEKKDAPVAQKETKWQGNVIRFYKDKSMLEIHGGAAPSSDLRKVAYDSSTQWTKQGKPGQQDEVKEGSFVILLGHVDDSGVLHATRIDLRRP |
| Ga0193751_10008699 | F007640 | GGA | MIGRAAKTVLRHSRQLARPSRKVCPFCFEAEHIGGRNHISQVTVDVCQAHHALLTEERLSAGAEMKKQPHTIKTVEMAIRSLAVTGRAITSTMEKLCEALEFCAEMLNRARR |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |