Scaffold Ga0193751_1000280

Overview

Basic Information

• Taxon OID: 3300019888
• Scaffold ID: Ga0193751_1000280
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43511
• Total Scaffold Genes: 38
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (57.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8924
  • Long. (^o): -106.9111
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010257	Metagenome / Metatranscriptome	306	Y
F017275	Metagenome / Metatranscriptome	241	Y
F053237	Metagenome / Metatranscriptome	141	Y
F091679	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193751_100028010	F091679	GAG	VLAIILFFLSLLSHREPWVLEYHCEASSEDFCSDGGHGAEKSFPSKQEAIDWIQGNYIYWPDTLRHGDVRMACVVTYLDGDDPDPITRLRKEVDCDTQANLDKNRGRDTRWSDRWSEQ
Ga0193751_100028034	F053237	GAGG	MNNIGQPAQPNRELVECAIAEVLGIAQRQGITPADFVRMLDSGMRMSDFLTAMDGFTRADHTRDRDFS
Ga0193751_100028037	F010257	N/A	MAKIIEFFVPSSFRKKATKWMPPEEYGKVIPFSLPQKKSA
Ga0193751_10002808	F017275	GAG	VTLTQISSTFWGSYGASFIALLGFLLNGFLMYGAAQKLAGQREEQRVADQAWKKEHSAQANLRDVAIAALQAMGNSNEATVKGVQGQLLLIQAELQALRNRTGAFPKSK