NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193751_1000243

Scaffold Ga0193751_1000243


Overview

Basic Information
Taxon OID3300019888 Open in IMG/M
Scaffold IDGa0193751_1000243 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47655
Total Scaffold Genes50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (74.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8924Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000042Metagenome / Metatranscriptome3762Y
F004589Metagenome / Metatranscriptome432Y
F005961Metagenome / Metatranscriptome385Y
F037838Metagenome / Metatranscriptome167Y
F103602Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0193751_100024310F005961AGGAMKILLFAGLLLVALGIASLVVPIPHTETQGIKIGDAKLGVETSHSEHVSPTISVVLIAGGIALSIAGARSRAS
Ga0193751_100024329F103602AGGCGGLFGILPLPPPMEIDIKDRIAALCAKVIAAPDRSEEFVCAMEELNSALSEHAENLRSQIANLRQKGFPHSSDRGER
Ga0193751_10002433F000042AGAAGMKNIKFVVKVNRGGAHAPQYVLRIDRLPIQTTTNRKLALVMGRFTAEDAVKSMQNSHCNPELVSVRVGA
Ga0193751_100024335F037838AGAAGMDGESTAWIRAQASRRYDQSRAWLARLPAQARIILGLFLVAAVLLALHTASSGKNASLHLTLQHGFRSADLSLWIDGDLAYFGKLRGSTKKKFGLIPGSVYGRLSEIVPVSAGTHRIRVQVKSEDGSTQQDSLTGDFSPNSERELSVSARPNGLALAWQASNASGPSSGSGWFARYAGALCLTIGGSIISAITGFALRELPAHIRARQSDEPKVHSTAAGH
Ga0193751_10002439F004589GAGGMKKQYLHLSAYSCDKCAGPVIAGSIGVRENEISKETDIRQVGAICLTCGQRQSKASGPGLTRSFPPMLWEFTKAMGARAAAVT
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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