Scaffold Ga0193751

Basic Information
Taxon OID	3300019888 Open in IMG/M
Scaffold ID	Ga0193751_1000227 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300019888 Open in IMG/M

Scaffold ID

Ga0193751_1000227 Open in IMG/M

Source Dataset Name

Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	50132
Total Scaffold Genes	41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	27 (65.85%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

50132

Total Scaffold Genes

41 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

27 (65.85%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (33.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8924	Long. (^o)	-106.9111	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.8924

Long. (^o)

-106.9111

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000525	Metagenome / Metatranscriptome	1049	Y
F002927	Metagenome / Metatranscriptome	520	Y
F069199	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193751_100022714	F000525	N/A	MRATKATKSLLLAVLLCLILLCLCMGCSPRDFLTRRLAADLISTSDTFKAPQLFWLRTGIVSNQDFSSPDFMVLQRRGWIIGTEHKCPAGVEPPPCWDVLLTPLGVETIRPLITNALPGNGRDNGPIGIQIVRRELLSIAGISKAGNFADVEFIWRWASINQVGAALYDSGVHYRSTVGFRDYDDGWHVVEQNARSNQPLDEALRNAQPTAP
Ga0193751_100022720	F069199	N/A	MPENGIKKNLQLHEIAPSDLEEVARFISRVSGSDTPLPRALERLSWILLENPAREPGDPLGWLLRVPSGEVVGCMCCAPQKFCFGQTTLTLMMANSFYVDHQYRGGGTSILLKYLQLGRRYPLFVSSANGTVAEMWRKLGGYPLGNSDWEVLGIVSWPPLLAESVYRKTASDRMARFTAALASPWLRARRWLFAGIAQGELVALGSPEEAACVCADHRSDKITSCRDVPFLKWRYFSRIKPTTRLFAFRPRDGEKKQFMVGVHLQNRGYKQQIRALHVLDIWGEADPKSYLAIAACLWREYRDQIDMLVFRCLNPMQQQALTANGFKVRPFAAPIAWCIDKHGLLPSKTWYFVPADGDMF
Ga0193751_10002276	F002927	GGCGG	MEPESGSRSGFSLRGSAGLIIAVVVVAILLIAFPAYRWFFLISVLIGLVIAGGLMLWHRLHPIKEQDVHPKRPLGL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193751_1000227

Overview

Ecosystem & Geography

Associated Families

Sequences