Scaffold Ga0193751_1000158

Overview

Basic Information

• Taxon OID: 3300019888
• Scaffold ID: Ga0193751_1000158
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 61999
• Total Scaffold Genes: 52
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (78.85%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8924
  • Long. (^o): -106.9111
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000236	Metagenome / Metatranscriptome	1499	Y
F004899	Metagenome / Metatranscriptome	419	Y
F006203	Metagenome / Metatranscriptome	379	Y
F015367	Metagenome / Metatranscriptome	255	Y
F049868	Metagenome / Metatranscriptome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193751_100015810	F004899	GGAG	MLRIEFHDAANTVTMRLEGRFVGPFAKDARELVTRCKIPPRLVVNLSEVTFVDAVGEEVLSWLGRIGGEFVAESCYPLHVCERLHLPMARKRVEALPQAM
Ga0193751_10001582	F006203	GGAGG	MLESTIVLLDDLLLSALTLLIGICVVGSIVAAVRAVSRGSATASTRR
Ga0193751_100015828	F049868	GAG	MNLTKAAAVITLIVALVAAGYLAYEATLVRSRYDAALLACTNCTTLKESMAANWREVESSIALLKAKRKYREAEKFARDHAGEKPPDIDVPCMDCEMPAPDYTMPSAIAGLGLIASTLLFGASKPRR
Ga0193751_10001583	F015367	AGGAG	MKSKYLQYLAVLSTLVLLFPVGALARDKAHSVEIPYAVQVGGTRITPGSYKVAWQGTGPAVEVSFSQYGKTVVTVPGTLKTNDDQVTQDAIVTEATSADTTTLEEIDFGHQKEALVFDQSQNQGGQ
Ga0193751_100015833	F000236	N/A	MERKIFWLSFTVLGLAADFILPLWWVLGATIPIGYISWWLAYHSGWFE