Scaffold Ga0193751

Basic Information
Taxon OID	3300019888 Open in IMG/M
Scaffold ID	Ga0193751_1000020 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300019888 Open in IMG/M

Scaffold ID

Ga0193751_1000020 Open in IMG/M

Source Dataset Name

Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	142294
Total Scaffold Genes	131 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	114 (87.02%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

142294

Total Scaffold Genes

131 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

114 (87.02%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8924	Long. (^o)	-106.9111	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.8924

Long. (^o)

-106.9111

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000208	Metagenome / Metatranscriptome	1593	Y
F001010	Metagenome / Metatranscriptome	807	Y
F010268	Metagenome / Metatranscriptome	306	Y
F013210	Metagenome / Metatranscriptome	273	Y
F019726	Metagenome / Metatranscriptome	228	Y
F020407	Metagenome / Metatranscriptome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193751_1000020130	F019726	AGGAG	MSTSQHSPLSIVPGVGLQHRPEESDRECEPTIGLKAVAKILDCSAEQCRRLAEAKKIPVFRIGYRWKSTASAIVRWREEQLALICHSRPSEER
Ga0193751_100002037	F000208	AGGAG	MAMRIRVFMRADLYEHRKQQHIERSYRIEDERPVPVNGLCSFVAVREKSNSDGVDELVAQALGGKSR
Ga0193751_10000204	F010268	GGAGG	MATMIAAPADERTSQLTTRSTGRGTRRVRPATEEENVLGARFFLSKPGANGISPELGRELPNEGEAKVEALKLGVTYYSVQEWRPVPDFGGKNPELKREAITRKGTA
Ga0193751_10000205	F020407	AGGAGG	MVKQRFLTHFKPWLFAVIRVVGLIVGYQLFDKARTYLQYAPLNSADVLLGAVVALLMAGLLCGLWAWGEWCWFKMQRLRGFCTELKRAFGNHWGPKAVRTSQPVTRNMA
Ga0193751_100002067	F001010	AGGAG	MAVVVDMQNTGDSGARAEIALVIEHVLSDRPGEWRVSIVGSRENDNWEFKIEGPKGFERSYTLIGAAGQHQPDAIRHLLLKLLPSSA
Ga0193751_100002086	F013210	GAGG	MKRSDVDGTSQVSRCLNAVSLQNAVLCAECDVVSDSPHDRCLVCGSPSLFNISRMLGGTLPRDRATLIGPALVAPAHPELVLNFSRTHRVRRKVPA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193751_1000020

Overview

Ecosystem & Geography

Associated Families

Sequences