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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300019888 Open in IMG/M |
| Scaffold ID | Ga0193751_1000002 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 471286 |
| Total Scaffold Genes | 452 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 189 (41.81%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: East River, Colorado | |||||||
| Coordinates | Lat. (o) | 38.8924 | Long. (o) | -106.9111 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002074 | Metagenome | 596 | Y |
| F013624 | Metagenome | 269 | Y |
| F039248 | Metagenome | 164 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0193751_1000002149 | F002074 | N/A | VNQRALQFFFVAAITLSLSVTLLRGALSSGATYSLGFVDIDGNKLSTADGHVTVLVVATTADWEKARAVGERVPDYCLGNLDYRMITVIRFIRKHGPIMRQIAMAVVKHRVTEEAKRLQSRYDTNKITRDARQDIFTVIDFDGTVSSQLGEPAGATDFCVFVFGRQGELLAQWHGVPSAKQLAAVVK |
| Ga0193751_1000002189 | F039248 | GGA | VLNSYVLRKSLLTFSVVLCCDFLLGSRSHVAFAAEEPSYTPPPFACEVRYHFREHLRDAEPGEKSVSAPAFEREGLPASRVVISDGLATRIVEGRVAHLPYQFLVKIGPKSNSEVGTFEISVLDGSGKPVTGFPQVMPNPLTKTGDSSRKEFELPVTEAVRTNIEKTLLKGDQFLTHVDLIVGMDEDFISQQFAK |
| Ga0193751_1000002192 | F013624 | N/A | MAHGWFEVLWVSLGFVIGLFVTARIALPILLGLPRAIRLVASGEMRAAVYRRLLFTPVLWIVQLAVVVFLVGFFWPSAPAWFQSNDALITGLRLGVMGILLSALSKKSREDFHTNFDQSYAQFYVHRDARRRRPNRHRSSTVPS |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |