Scaffold Ga0193751_1000001

Overview

Basic Information

• Taxon OID: 3300019888
• Scaffold ID: Ga0193751_1000001
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 531359
• Total Scaffold Genes: 541
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 263 (48.61%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Candidatus Udaeobacter → Candidatus Udaeobacter copiosus (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8924
  • Long. (^o): -106.9111
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000495	Metagenome / Metatranscriptome	1076	Y
F022074	Metagenome	216	Y
F033366	Metagenome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193751_1000001249	F000495	GAGG	MRRIFLSGMLFGVMITTAFTLAFAIPANSDYWRMEIWKRGGAAWTMDMKTGHTGWKWMVEPIPDAPIPAKRVIVPPSKVKVSVEQL
Ga0193751_1000001280	F022074	N/A	MKKNFDARLSSELGAPAKWALMIFTLIFVSAANARQLSDSSAAGLDGQWYHNGKPTRILVAPDGRSITITNEFGQSNDGYANGPRNLVIPSLGISGEVNKKGRRISWTNGTEWTREPKNPGPDFGVNLSGRWFRNGQATSINVAPDGRNFTITNEWGLPGVGYITRSGELKIQSWGVTGHLSKNGQRISWSNGTEWTRPRLY
Ga0193751_1000001349	F033366	AGGAGG	MKRIAKWLPLLAAIAVAGIASAASPKMVCTLTNKEVKTCCCETQNGKFLCKLTGKTLDKCCCTGM